1 // This file is part of Eigen, a lightweight C++ template library
2 // for linear algebra.
3 //
4 // Copyright (C) 2011 Gael Guennebaud <[email protected]>
5 // Copyright (C) 2012 Desire NUENTSA WAKAM <[email protected]>
6 //
7 // This Source Code Form is subject to the terms of the Mozilla
8 // Public License v. 2.0. If a copy of the MPL was not distributed
9 // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
11 #ifndef EIGEN_SPARSE_MARKET_IO_H
12 #define EIGEN_SPARSE_MARKET_IO_H
13
14 #include <iostream>
15 #include <vector>
16
17 namespace Eigen {
18
19 namespace internal
20 {
21 template <typename Scalar, typename StorageIndex>
GetMarketLine(const char * line,StorageIndex & i,StorageIndex & j,Scalar & value)22 inline void GetMarketLine (const char* line, StorageIndex& i, StorageIndex& j, Scalar& value)
23 {
24 std::stringstream sline(line);
25 sline >> i >> j >> value;
26 }
27
GetMarketLine(const char * line,int & i,int & j,float & value)28 template<> inline void GetMarketLine (const char* line, int& i, int& j, float& value)
29 { std::sscanf(line, "%d %d %g", &i, &j, &value); }
30
GetMarketLine(const char * line,int & i,int & j,double & value)31 template<> inline void GetMarketLine (const char* line, int& i, int& j, double& value)
32 { std::sscanf(line, "%d %d %lg", &i, &j, &value); }
33
GetMarketLine(const char * line,int & i,int & j,std::complex<float> & value)34 template<> inline void GetMarketLine (const char* line, int& i, int& j, std::complex<float>& value)
35 { std::sscanf(line, "%d %d %g %g", &i, &j, &numext::real_ref(value), &numext::imag_ref(value)); }
36
GetMarketLine(const char * line,int & i,int & j,std::complex<double> & value)37 template<> inline void GetMarketLine (const char* line, int& i, int& j, std::complex<double>& value)
38 { std::sscanf(line, "%d %d %lg %lg", &i, &j, &numext::real_ref(value), &numext::imag_ref(value)); }
39
40 template <typename Scalar, typename StorageIndex>
GetMarketLine(const char * line,StorageIndex & i,StorageIndex & j,std::complex<Scalar> & value)41 inline void GetMarketLine (const char* line, StorageIndex& i, StorageIndex& j, std::complex<Scalar>& value)
42 {
43 std::stringstream sline(line);
44 Scalar valR, valI;
45 sline >> i >> j >> valR >> valI;
46 value = std::complex<Scalar>(valR,valI);
47 }
48
49 template <typename RealScalar>
GetVectorElt(const std::string & line,RealScalar & val)50 inline void GetVectorElt (const std::string& line, RealScalar& val)
51 {
52 std::istringstream newline(line);
53 newline >> val;
54 }
55
56 template <typename RealScalar>
GetVectorElt(const std::string & line,std::complex<RealScalar> & val)57 inline void GetVectorElt (const std::string& line, std::complex<RealScalar>& val)
58 {
59 RealScalar valR, valI;
60 std::istringstream newline(line);
61 newline >> valR >> valI;
62 val = std::complex<RealScalar>(valR, valI);
63 }
64
65 template<typename Scalar>
putMarketHeader(std::string & header,int sym)66 inline void putMarketHeader(std::string& header,int sym)
67 {
68 header= "%%MatrixMarket matrix coordinate ";
69 if(internal::is_same<Scalar, std::complex<float> >::value || internal::is_same<Scalar, std::complex<double> >::value)
70 {
71 header += " complex";
72 if(sym == Symmetric) header += " symmetric";
73 else if (sym == SelfAdjoint) header += " Hermitian";
74 else header += " general";
75 }
76 else
77 {
78 header += " real";
79 if(sym == Symmetric) header += " symmetric";
80 else header += " general";
81 }
82 }
83
84 template<typename Scalar, typename StorageIndex>
PutMatrixElt(Scalar value,StorageIndex row,StorageIndex col,std::ofstream & out)85 inline void PutMatrixElt(Scalar value, StorageIndex row, StorageIndex col, std::ofstream& out)
86 {
87 out << row << " "<< col << " " << value << "\n";
88 }
89 template<typename Scalar, typename StorageIndex>
PutMatrixElt(std::complex<Scalar> value,StorageIndex row,StorageIndex col,std::ofstream & out)90 inline void PutMatrixElt(std::complex<Scalar> value, StorageIndex row, StorageIndex col, std::ofstream& out)
91 {
92 out << row << " " << col << " " << value.real() << " " << value.imag() << "\n";
93 }
94
95
96 template<typename Scalar>
putVectorElt(Scalar value,std::ofstream & out)97 inline void putVectorElt(Scalar value, std::ofstream& out)
98 {
99 out << value << "\n";
100 }
101 template<typename Scalar>
putVectorElt(std::complex<Scalar> value,std::ofstream & out)102 inline void putVectorElt(std::complex<Scalar> value, std::ofstream& out)
103 {
104 out << value.real() << " " << value.imag()<< "\n";
105 }
106
107 } // end namespace internal
108
getMarketHeader(const std::string & filename,int & sym,bool & iscomplex,bool & isvector)109 inline bool getMarketHeader(const std::string& filename, int& sym, bool& iscomplex, bool& isvector)
110 {
111 sym = 0;
112 iscomplex = false;
113 isvector = false;
114 std::ifstream in(filename.c_str(),std::ios::in);
115 if(!in)
116 return false;
117
118 std::string line;
119 // The matrix header is always the first line in the file
120 std::getline(in, line); eigen_assert(in.good());
121
122 std::stringstream fmtline(line);
123 std::string substr[5];
124 fmtline>> substr[0] >> substr[1] >> substr[2] >> substr[3] >> substr[4];
125 if(substr[2].compare("array") == 0) isvector = true;
126 if(substr[3].compare("complex") == 0) iscomplex = true;
127 if(substr[4].compare("symmetric") == 0) sym = Symmetric;
128 else if (substr[4].compare("Hermitian") == 0) sym = SelfAdjoint;
129
130 return true;
131 }
132
133 template<typename SparseMatrixType>
loadMarket(SparseMatrixType & mat,const std::string & filename)134 bool loadMarket(SparseMatrixType& mat, const std::string& filename)
135 {
136 typedef typename SparseMatrixType::Scalar Scalar;
137 typedef typename SparseMatrixType::StorageIndex StorageIndex;
138 std::ifstream input(filename.c_str(),std::ios::in);
139 if(!input)
140 return false;
141
142 char rdbuffer[4096];
143 input.rdbuf()->pubsetbuf(rdbuffer, 4096);
144
145 const int maxBuffersize = 2048;
146 char buffer[maxBuffersize];
147
148 bool readsizes = false;
149
150 typedef Triplet<Scalar,StorageIndex> T;
151 std::vector<T> elements;
152
153 Index M(-1), N(-1), NNZ(-1);
154 Index count = 0;
155 while(input.getline(buffer, maxBuffersize))
156 {
157 // skip comments
158 //NOTE An appropriate test should be done on the header to get the symmetry
159 if(buffer[0]=='%')
160 continue;
161
162 if(!readsizes)
163 {
164 std::stringstream line(buffer);
165 line >> M >> N >> NNZ;
166 if(M > 0 && N > 0)
167 {
168 readsizes = true;
169 mat.resize(M,N);
170 mat.reserve(NNZ);
171 }
172 }
173 else
174 {
175 StorageIndex i(-1), j(-1);
176 Scalar value;
177 internal::GetMarketLine(buffer, i, j, value);
178
179 i--;
180 j--;
181 if(i>=0 && j>=0 && i<M && j<N)
182 {
183 ++count;
184 elements.push_back(T(i,j,value));
185 }
186 else
187 std::cerr << "Invalid read: " << i << "," << j << "\n";
188 }
189 }
190
191 mat.setFromTriplets(elements.begin(), elements.end());
192 if(count!=NNZ)
193 std::cerr << count << "!=" << NNZ << "\n";
194
195 input.close();
196 return true;
197 }
198
199 template<typename VectorType>
loadMarketVector(VectorType & vec,const std::string & filename)200 bool loadMarketVector(VectorType& vec, const std::string& filename)
201 {
202 typedef typename VectorType::Scalar Scalar;
203 std::ifstream in(filename.c_str(), std::ios::in);
204 if(!in)
205 return false;
206
207 std::string line;
208 int n(0), col(0);
209 do
210 { // Skip comments
211 std::getline(in, line); eigen_assert(in.good());
212 } while (line[0] == '%');
213 std::istringstream newline(line);
214 newline >> n >> col;
215 eigen_assert(n>0 && col>0);
216 vec.resize(n);
217 int i = 0;
218 Scalar value;
219 while ( std::getline(in, line) && (i < n) ){
220 internal::GetVectorElt(line, value);
221 vec(i++) = value;
222 }
223 in.close();
224 if (i!=n){
225 std::cerr<< "Unable to read all elements from file " << filename << "\n";
226 return false;
227 }
228 return true;
229 }
230
231 template<typename SparseMatrixType>
232 bool saveMarket(const SparseMatrixType& mat, const std::string& filename, int sym = 0)
233 {
234 typedef typename SparseMatrixType::Scalar Scalar;
235 typedef typename SparseMatrixType::RealScalar RealScalar;
236 std::ofstream out(filename.c_str(),std::ios::out);
237 if(!out)
238 return false;
239
240 out.flags(std::ios_base::scientific);
241 out.precision(std::numeric_limits<RealScalar>::digits10 + 2);
242 std::string header;
243 internal::putMarketHeader<Scalar>(header, sym);
244 out << header << std::endl;
245 out << mat.rows() << " " << mat.cols() << " " << mat.nonZeros() << "\n";
246 int count = 0;
247 for(int j=0; j<mat.outerSize(); ++j)
248 for(typename SparseMatrixType::InnerIterator it(mat,j); it; ++it)
249 {
250 ++ count;
251 internal::PutMatrixElt(it.value(), it.row()+1, it.col()+1, out);
252 }
253 out.close();
254 return true;
255 }
256
257 template<typename VectorType>
saveMarketVector(const VectorType & vec,const std::string & filename)258 bool saveMarketVector (const VectorType& vec, const std::string& filename)
259 {
260 typedef typename VectorType::Scalar Scalar;
261 typedef typename VectorType::RealScalar RealScalar;
262 std::ofstream out(filename.c_str(),std::ios::out);
263 if(!out)
264 return false;
265
266 out.flags(std::ios_base::scientific);
267 out.precision(std::numeric_limits<RealScalar>::digits10 + 2);
268 if(internal::is_same<Scalar, std::complex<float> >::value || internal::is_same<Scalar, std::complex<double> >::value)
269 out << "%%MatrixMarket matrix array complex general\n";
270 else
271 out << "%%MatrixMarket matrix array real general\n";
272 out << vec.size() << " "<< 1 << "\n";
273 for (int i=0; i < vec.size(); i++){
274 internal::putVectorElt(vec(i), out);
275 }
276 out.close();
277 return true;
278 }
279
280 } // end namespace Eigen
281
282 #endif // EIGEN_SPARSE_MARKET_IO_H
283